Package: seawaveQ 2.0.2

seawaveQ: SEAWAVE-Q Model

A model and utilities for analyzing trends in chemical concentrations in streams with a seasonal wave (seawave) and adjustment for streamflow (Q) and other ancillary variables. See Ryberg and York, 2020, <doi:10.3133/ofr20201082>.

Authors:Karen R. Ryberg [aut, cre], Aldo V. Vecchia [aut], Benjamin York [ctb]

seawaveQ_2.0.2.tar.gz
seawaveQ_2.0.2.zip(r-4.5)seawaveQ_2.0.2.zip(r-4.4)
seawaveQ_2.0.2.tgz(r-4.5-any)seawaveQ_2.0.2.tgz(r-4.4-any)
seawaveQ_2.0.2.tar.gz(r-4.5-noble)seawaveQ_2.0.2.tar.gz(r-4.4-noble)
seawaveQ_2.0.2.tgz(r-4.4-emscripten)
seawaveQ.pdf |seawaveQ.html✨
seawaveQ/json (API)
NEWS

# Install 'seawaveQ' in R:

install.packages('seawaveQ', repos = c('https://kryberg-usgs.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

IllRivValleyCty - Water-quality data for 05586100 Illinois River at Valley City, Ill.
cqwMoRivOmaha - Continuously monitored (daily) data for 06610000 Missouri River at Omaha, Neb.
examplecavdat - Example continuous ancillary variable data.
examplecavmat - Example continuous ancillary variable matrix.
examplecdatsub - Example water-quality data.
examplecentmp - Example logical vector.
exampleclog - Example of logarithmically transformed concentration data.
exampleqwcols - Example data indicators.
examplestpars - Example matrix for internal use.
exampletndlin - Example numeric vector used internally.
exampletndlinpr - Example numeric vector used internally.
exampletseas - Example numeric vector used internally.
exampletseaspr - Example numeric vector used internally.
exampletyr - Example numeric vector used internally.
exampletyrpr - Example numeric vector used internally.
qwMoRivOmaha - Water-quality data for 06610000 Missouri River at Omaha, Nebr.

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

2.43 score 27 scripts 532 downloads 10 exports 84 dependencies

Last updated 4 years agofrom:e77e54a3f2. Checks:6 OK. Indexed: yes.

Target	Result	Latest binary
Doc / Vignettes	OK	Feb 13 2025
R-4.5-win	OK	Feb 13 2025
R-4.5-mac	OK	Feb 13 2025
R-4.5-linux	OK	Feb 13 2025
R-4.4-win	OK	Feb 13 2025
R-4.4-mac	OK	Feb 13 2025

Exports:cenScatPlot combineData compwaveconv fitMod fitswavecav loadCalculations pesticideTrendCalcs prepData seawaveQPlots seawaveQPlots2

Dependencies:backports base64enc bslib cachem checkmate cli cluster codetools colorspace cpp11 data.table digest evaluate fansi farver fastmap fontawesome foreign Formula fs generics ggplot2 glue gridExtra gtable highr Hmisc htmlTable htmltools htmlwidgets isoband jquerylib jsonlite knitr labeling lattice lifecycle lubridate magrittr MASS Matrix MatrixModels memoise mgcv mime multcomp munsell mvtnorm nlme nnet pillar pkgconfig plyr polspline quantreg R6 rappdirs RColorBrewer Rcpp reshape2 rlang rmarkdown rms rpart rstudioapi sandwich sass scales SparseM stringi stringr survival TH.data tibble timechange tinytex utf8 vctrs viridis viridisLite withr xfun yaml zoo

Using seawaveQ

Rendered fromvignette.Rnwusingutils::Sweaveon Feb 13 2025.

Last update: 2020-08-04
Started: 2013-12-13

Citation

Readme and manuals

Help Manual

Help page	Topics
A model and utilities for analyzing trends in chemical concentrations in streams with a seasonal wave (seawave) and adjustment for streamflow (Q) and other ancillary variables (Q) and other ancillary variables	seawaveQ-package seawaveQ
Scatter plot of water-quality data	cenScatPlot
Combine water-quality sample data and continuous ancillary variables	combineData
Seasonal Wave Computation	compwaveconv
Continuously monitored (daily) data for 06610000 Missouri River at Omaha, Neb.	cqwMoRivOmaha
Example continuous ancillary variable data.	examplecavdat
Example continuous ancillary variable matrix.	examplecavmat
Example water-quality data.	examplecdatsub
Example logical vector.	examplecentmp
Example of logarithmically transformed concentration data.	exampleclog
Example data indicators.	exampleqwcols
Example matrix for internal use.	examplestpars
Example numeric vector used internally.	exampletndlin
Example numeric vector used internally.	exampletndlinpr
Example numeric vector used internally.	exampletseas
Example numeric vector used internally.	exampletseaspr
Example numeric vector used internally.	exampletyr
Example numeric vector used internally.	exampletyrpr
Internal function that fits the seawaveQ model.	fitMod
Fit seasonal wave and continuous ancillary data for trend analysis	fitswavecav
Water-quality data for 05586100 Illinois River at Valley City, Ill.	IllRivValleyCty
Calculate annual loads and summarize trends	loadCalculations
Summarize linear trends	pesticideTrendCalcs
Prepares concentration data and continuous ancillary data	prepData
Water-quality data for 06610000 Missouri River at Omaha, Nebr.	qwMoRivOmaha
Internal function that generates plots of data and model results.	seawaveQPlots
Internal function that generates plots of data and model results.	seawaveQPlots2